This default behaviour can be changed by using any of the following options: “nearest”, “bilinear”, “bicubic”, “gaussian” Be default, plotHeatmap uses the method nearest if the number of columns is 1000 or less. If the heatmap image contains a large number of columns is usually better to use an interpolation method to produce better results (see ). Possible choices: auto, nearest, bilinear, bicubic, gaussian If this option is given, then the matrix of values underlying the heatmap will be saved using this name, e.g. This is useful, for example, to generate other heatmaps while keeping the sorting of the first heatmap. The order of the regions in the file follows the sorting order selected. Usage : plotHeatmap - outFileName OUTFILENAME įile name into which the regions are saved after skipping zeros or min/max threshold values.
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